There are many fields that can be obtained via the Search and Media API. This tutorial is meant to aid in identifying these fields.
In this demo we will cover how to:
idig_meta_fields()idig_search_records()idig_meta_fields()idig_search_media()To identify the raw, or verbatim, fields available with the Search API, you can run the following:
record_fields <- idig_meta_fields(type = "records", subset = "raw")
rfall <- data.frame(matrix(ncol = 2, nrow = 0))
colnames(rfall) <- c("Type", "FieldNameValue")
for(i in 1:length(record_fields)) {
rf <- data.frame(
Type = record_fields[[i]]$type,
FieldNameValue = record_fields[[i]]$fieldName,
stringsAsFactors = FALSE
)
rfall <- rbind(rfall, rf)
}
colnames(rfall) <- c("type", "fieldName")
nrow(rfall)## [1] 220In addition to the fields provided by data providers, the Search API contains fields that have been indexed and potentially modified by iDigBio. To identify the indexed fields available with the Search API, you can run the following:
record_fields_index <- idig_meta_fields(type = "records", subset = "indexed")
rfalli <- data.frame(matrix(ncol = 2, nrow = 0))
colnames(rfalli) <- c("Type", "FieldNameValue")
for(i in 1:length(record_fields_index)) {
rf <- data.frame(
Type = record_fields_index[[i]]$type,
FieldNameValue = record_fields_index[[i]]$fieldName,
stringsAsFactors = FALSE
)
rfalli <- rbind(rfalli, rf)
}
colnames(rfalli) <- c("type", "fieldName")
nrow(rfalli)## [1] 82Note, these fields lists are different.
## [1] FALSEHowever, they contain similar information. For example, scientificName can be found in both the raw and index fields.
## type fieldName
## 171 string data.dwc:samplingProtocol## type fieldName
## 69 string scientificnameTo identify the raw, or verbatim, fields available with the Media Record API, you can run the following:
media_fields <- idig_meta_fields(type = "media", subset = "raw")
mfall <- data.frame(matrix(ncol = 2, nrow = 0))
colnames(mfall) <- c("Type", "FieldNameValue")
for(i in 1:length(media_fields)) {
mf <- data.frame(
Type = media_fields[[i]]$type,
FieldNameValue = media_fields[[i]]$fieldName,
stringsAsFactors = FALSE
)
mfall <- rbind(mfall, mf)
}
colnames(mfall) <- c("type", "fieldName")
nrow(mfall)## [1] 142Like the Search API, the Media Record API has fields that have been indexed and potentially modified by iDigBio. To identify the indexed fields available with the Media Record API, you can run the following:
media_fields_indexed <- idig_meta_fields(type = "media", subset = "indexed")
mfalli <- data.frame(matrix(ncol = 2, nrow = 0))
colnames(mfalli) <- c("Type", "FieldNameValue")
for(i in 1:length(media_fields_indexed)) {
mf <- data.frame(
Type = media_fields_indexed[[i]]$type,
FieldNameValue = media_fields_indexed[[i]]$fieldName,
stringsAsFactors = FALSE
)
mfalli <- rbind(mfalli, mf)
}
colnames(mfalli) <- c("type", "fieldName")
nrow(mfalli)## [1] 21Note, all index fields associated with the Media Record API are
returned by default with the idig_search_media()
function.
## [1] "accessuri" "datemodified" "dqs" "etag"
## [5] "flags" "format" "hasSpecimen" "licenselogourl"
## [9] "mediatype" "modified" "recordids" "records"
## [13] "recordset" "rights" "tag" "type"
## [17] "uuid" "version" "webstatement" "xpixels"
## [21] "ypixels"To obtain records with these fields with the
idig_search_media() function, you simply list the
fields argument as equal to these fields.
out <- idig_search_media(rq=list(scientificname="Galax urceolata"), fields = mfalli$fieldName)
out %>%
kable() %>%
kable_styling(bootstrap_options = c("striped", "hover", "condensed"),
font_size = 12,
fixed_thead = T) %>%
scroll_box(width = "100%", height = "400px")| accessuri | datemodified | dqs | etag | flags | format | hasSpecimen | licenselogourl | mediatype | modified | recordids | records | recordset | rights | tag | type | uuid | version | webstatement | xpixels | ypixels |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://media01.symbiota.org/media/seinet/sernec/AASU/AASU003/AASU003140.JPG | 2025-11-25T18:26:38.508445+00:00 | 0.5454545 | 11621a1eae5d30f6d1bce04d335e02901195b5f9 | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png | images | NA | 43c69d2a-0fd2-4d34-a1ef-50d0f9c01353://media01.symbiota.org/media/seinet/sernec/aasu/aasu003/aasu003140.jpg, urn:uuid:7d7d2427-c759-4de3-acd8-284b63940ad8 , 43c69d2a-0fd2-4d34-a1ef-50d0f9c01353://sernecportal.org/imglib/seinet/sernec/aasu/aasu003/aasu003140.jpg | 15e3814e-7cf8-47d4-97e7-24aa40169c85 | 43c69d2a-0fd2-4d34-a1ef-50d0f9c01353 | BY-NC-SA | NA | NA | 00cbc182-e2dc-42ca-b819-25dcd22d83d0 | NA | http://creativecommons.org/licenses/by-nc-sa/4.0/ | NA | NA |
| https://cdn.floridamuseum.ufl.edu/Herbarium/bc01d15f-54e9-4b2c-8bfe-7009dcb03a56 | 2023-05-05T10:24:14.261979+00:00 | 0.6363636 | fb4b642d8882a821b9cea56dbf6318c9bf9815e4 | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by-nc/4.0/88x31.png | images | NA | 781fd581-7b93-471e-a025-413e4bcd849101d15f-54e9-4b2c-8bfe-7009dcb03a56 | df2b5e81-833f-4c65-849c-c3f5be0b2afd | 781fd581-7b93-471e-a025-413e4bcd8491 | BY-NC | NA | image | 0130f6e3-1a3c-4780-89c0-ec4e68b2e164 | NA | http://creativecommons.org/licenses/by-nc/4.0/ | NA | NA |
| https://media01.symbiota.org/media/seinet/sernec/CLEMS/CLEMS0042/CLEMS0042881.jpg | 2025-11-25T18:26:06.198472+00:00 | 0.5454545 | 53adb939f757e4d831411a078351fcddb93fcddc | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png | images | NA | 264c48ec-8636-451f-a7e0-74131bc6f84c://media01.symbiota.org/media/seinet/sernec/clems/clems0042/clems0042881.jpg, 264c48ec-8636-451f-a7e0-74131bc6f84c://sernecportal.org/imglib/seinet/sernec/clems/clems0042/clems0042881.jpg , urn:uuid:9f976087-4ccd-4c57-b731-1b67f86fcbfe | e0cfd2ed-1e6c-4c7a-8634-a80e3a172886 | 264c48ec-8636-451f-a7e0-74131bc6f84c | BY-NC-SA | NA | NA | 0162e889-a0e4-443b-8d43-70f47bb9bc60 | NA | http://creativecommons.org/licenses/by-nc-sa/4.0/ | NA | NA |
| https://media01.symbiota.org/media/seinet/sernec/CLEMS/CLEMS0042/CLEMS0042903.jpg | 2025-11-25T18:26:06.198472+00:00 | 0.5454545 | 717dc98d74bb31c2ec8c953deee117f59e3baeb5 | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png | images | NA | 264c48ec-8636-451f-a7e0-74131bc6f84c://media01.symbiota.org/media/seinet/sernec/clems/clems0042/clems0042903.jpg, urn:uuid:e8a32add-9f21-403b-9cfb-e7b63a4e4654 , 264c48ec-8636-451f-a7e0-74131bc6f84c://sernecportal.org/imglib/seinet/sernec/clems/clems0042/clems0042903.jpg | 4c336c9e-3978-4c45-a06b-d88048ddd62b | 264c48ec-8636-451f-a7e0-74131bc6f84c | BY-NC-SA | NA | NA | 0188e8f9-4f20-4ef9-8c7b-a4a59228a177 | NA | http://creativecommons.org/licenses/by-nc-sa/4.0/ | NA | NA |
| https://media01.symbiota.org/media/seinet/sernec/DUKE/DUKE10095/DUKE10095631.jpg | 2025-11-25T18:24:04.179329+00:00 | 0.5454545 | c3c8720311eda04cad9f80ab87a013700416e744 | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png | images | NA | 6258d160-a7aa-4937-bce3-3538eebd374f://media01.symbiota.org/media/seinet/sernec/duke/duke10095/duke10095631.jpg, urn:uuid:a95b36da-8a2c-4531-a0c1-d2c969e43f81 , 6258d160-a7aa-4937-bce3-3538eebd374f://sernecportal.org/imglib/seinet/sernec/duke/duke10095/duke10095631.jpg | a8eca4ba-520f-4385-909c-12bf290a2ab9 | 6258d160-a7aa-4937-bce3-3538eebd374f | BY-NC-SA | NA | NA | 01a835a0-aa7c-47e6-97dd-aa5cec50f53b | NA | http://creativecommons.org/licenses/by-nc-sa/4.0/ | NA | NA |
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| https://media01.symbiota.org/media/seinet/sernec/CLEMS/CLEMS0042/CLEMS0042872.jpg | 2025-11-25T18:26:06.198472+00:00 | 0.5454545 | 104ba40e2434e4aecc86f4e5966a40f33247d056 | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png | images | NA | 264c48ec-8636-451f-a7e0-74131bc6f84c://media01.symbiota.org/media/seinet/sernec/clems/clems0042/clems0042872.jpg, 264c48ec-8636-451f-a7e0-74131bc6f84c://sernecportal.org/imglib/seinet/sernec/clems/clems0042/clems0042872.jpg , urn:uuid:50d625f1-b8f9-4daf-9269-f33d3f7b3323 | 120b2bc5-8fa1-43f5-b27f-8b6ff9580bae | 264c48ec-8636-451f-a7e0-74131bc6f84c | BY-NC-SA | NA | NA | 01c42708-68d8-476b-8160-cdaab0f3fc12 | NA | http://creativecommons.org/licenses/by-nc-sa/4.0/ | NA | NA |
| https://cdn.floridamuseum.ufl.edu/Herbarium/5dcb2ba3-7e83-4f91-bb52-ba263bf86aaa | 2023-05-05T10:24:14.261979+00:00 | 0.6363636 | 90e254c34f2ae98d4aa1c3850a413749cd2d9eef | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by-nc/4.0/88x31.png | images | NA | 781fd581-7b93-471e-a025-413e4bcd8491\5dcb2ba3-7e83-4f91-bb52-ba263bf86aaa | cdb1d275-8885-4c32-b625-06d7b3c0af9f | 781fd581-7b93-471e-a025-413e4bcd8491 | BY-NC | NA | image | 024810b0-60e3-4f0e-a533-341fb83c0477 | NA | http://creativecommons.org/licenses/by-nc/4.0/ | NA | NA |
| https://collections.nmnh.si.edu/media/?i=13290819&h=2000 | 2025-10-29T16:53:13.500160+00:00 | 0.8181818 | 48fe12248ac428bfd7f4e40cb0cc97860eb4298c | NULL | image/jpeg | TRUE | http://i.creativecommons.org/p/zero/1.0/88x31.png | images | NA | a6eee223-cf3b-4079-8bb2-b77dad8cae9d://n2t.net/ark:/65665/m330f9fe27-c488-43b8-aa05-ddd233eda902 | 1d6984cd-10b7-4bf2-beba-f1d43bccb757 | a6eee223-cf3b-4079-8bb2-b77dad8cae9d | CC0 | NA | image | 0276db7e-5b6a-4edd-b2a4-de1c10013a56 | NA | http://creativecommons.org/publicdomain/zero/1.0/ | 9065 | 6812 |
| https://media01.symbiota.org/media/seinet/sernec/TENN/TENN-V-0170/TENN-V-0170916.jpg | 2025-11-25T18:05:47.759080+00:00 | 0.5454545 | 54ff9426620390940d1a52bfe5c0d8a518a71425 | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png | images | NA | d53132e6-7997-4850-8607-4fec5a3f9c3f://media01.symbiota.org/media/seinet/sernec/tenn/tenn-v-0170/tenn-v-0170916.jpg, d53132e6-7997-4850-8607-4fec5a3f9c3f://sernecportal.org/imglib/seinet/sernec/tenn/tenn-v-0170/tenn-v-0170916.jpg , urn:uuid:f3a7edab-6e09-447c-96a6-2d42ad4ce98b | 889b875d-f782-4d0d-aa46-fe59eec7003b | d53132e6-7997-4850-8607-4fec5a3f9c3f | BY-NC-SA | NA | NA | 035083e6-5310-43c5-bc6c-14b00aa81202 | NA | http://creativecommons.org/licenses/by-nc-sa/4.0/ | NA | NA |
| http://purl.dlib.indiana.edu/iudl/herbarium/full/IND-0096109 | 2025-11-25T18:39:33.587172+00:00 | 0.5454545 | a37f795a80b9ff79f878788d08715416ca526dfa | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png | images | NA | urn:uuid:bf8b480a-0649-4848-b0b2-e656e2b38bcc , 0dab1fc7-ca99-456b-9985-76edbac003e0://purl.dlib.indiana.edu/iudl/herbarium/full/ind-0096109 | b3b8dd78-3437-407b-9e39-d517d443e4a7 | 0dab1fc7-ca99-456b-9985-76edbac003e0 | BY-NC-SA | NA | NA | 037146a5-aaf1-4d76-b1b3-48c65f5bf497 | NA | http://creativecommons.org/licenses/by-nc-sa/4.0/ | NA | NA |
| https://media01.symbiota.org/media/cch2/RSA_VascularPlants/RSA0508/RSA0508063.jpg | 2026-04-23T17:36:48.691456+00:00 | 0.5454545 | a58b838b8783f72e302747bab5e766cabc6caeac | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by-nc/4.0/88x31.png | images | NA | a4e6033a-d1eb-46d3-869d-7c0328f09aa7://media01.symbiota.org/media/cch2/rsa_vascularplants/rsa0508/rsa0508063.jpg, urn:uuid:a0dcc5d3-5148-413d-972f-c1360973e7f3 , a4e6033a-d1eb-46d3-869d-7c0328f09aa7://cch2.org/imglib/cch2/rsa_vascularplants/rsa0508/rsa0508063.jpg | 4298315c-6752-4ce7-bf07-228b781b6e21 | a4e6033a-d1eb-46d3-869d-7c0328f09aa7 | BY-NC | NA | NA | 04016481-c1b3-43ea-9e84-4424fc51c396 | NA | http://creativecommons.org/licenses/by-nc/4.0/ | NA | NA |
| https://media01.symbiota.org/media/seinet/sernec/ETSU/ETSU025/ETSU025791.jpg | 2025-11-25T18:22:29.291123+00:00 | 0.5454545 | 31d291bd41984e80d9e64c50fb71163c2b3876b2 | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png | images | NA | 21b563bc-70c2-46d5-bce8-2489db2db3d8://media01.symbiota.org/media/seinet/sernec/etsu/etsu025/etsu025791.jpg, 21b563bc-70c2-46d5-bce8-2489db2db3d8://sernecportal.org/imglib/seinet/sernec/etsu/etsu025/etsu025791.jpg , urn:uuid:b7447460-5987-4627-90d0-a770c7e0f4d2 | 7a7f8c88-4949-4de9-b211-83c558fe6bab | 21b563bc-70c2-46d5-bce8-2489db2db3d8 | BY-NC-SA | NA | NA | 056fa51c-cab6-4f84-aae1-b58aef6557b5 | NA | http://creativecommons.org/licenses/by-nc-sa/4.0/ | NA | NA |
| http://mediaphoto.mnhn.fr/media/1441377563222aPRQXT9Lb0phhpAJ | 2016-05-04T09:52:03.417244+00:00 | 0.5454545 | 47fab9fb816b2e4672d2ec3bb22638009706d298 | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by/4.0/88x31.png | images | NA | 616857b7-f952-44ef-9b6f-576dc1e65b51://mediaphoto.mnhn.fr/media/1441377563222aprqxt9lb0phhpaj | 46808672-8178-431d-b81f-24e80c8fa3a9 | 616857b7-f952-44ef-9b6f-576dc1e65b51 | BY | NA | NA | 058ed772-c350-48ae-a711-5f3ab5cc5c4e | NA | http://creativecommons.org/licenses/by/4.0/ | NA | NA |
| https://media01.symbiota.org/media/seinet/sernec/ETSU/ETSU015/ETSU015780.jpg | 2025-11-25T18:22:29.291123+00:00 | 0.5454545 | 56180a4a27c5f1935f50f686af14b6d80b0af53d | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png | images | NA | 21b563bc-70c2-46d5-bce8-2489db2db3d8://media01.symbiota.org/media/seinet/sernec/etsu/etsu015/etsu015780.jpg, 21b563bc-70c2-46d5-bce8-2489db2db3d8://sernecportal.org/imglib/seinet/sernec/etsu/etsu015/etsu015780.jpg , urn:uuid:a7ccfa93-294e-46e7-bae6-8abc87f1fd36 | cc38c0ec-6102-4188-bc3a-23bdd7fab932 | 21b563bc-70c2-46d5-bce8-2489db2db3d8 | BY-NC-SA | NA | NA | 05a49cb9-2c98-4095-bb5f-8499cfc1c0e3 | NA | http://creativecommons.org/licenses/by-nc-sa/4.0/ | NA | NA |
| https://collections.nmnh.si.edu/media/?i=13277564&h=2000 | 2025-10-29T16:53:13.500160+00:00 | 0.8181818 | 38db375431dac3a8b302c817974806b8a4862b7e | NULL | image/jpeg | TRUE | http://i.creativecommons.org/p/zero/1.0/88x31.png | images | NA | a6eee223-cf3b-4079-8bb2-b77dad8cae9d://n2t.net/ark:/65665/m37ac14861-c9ec-4ba3-9dc3-6a226b093440 | d08df874-7bc6-4b73-be35-e222fc8dec97 | a6eee223-cf3b-4079-8bb2-b77dad8cae9d | CC0 | NA | image | 05d9f035-f21f-491a-9ab1-bddc5fb9be18 | NA | http://creativecommons.org/publicdomain/zero/1.0/ | 8891 | 6773 |
| https://web.corral.tacc.utexas.edu/brit/BRIT/BRIT1160000/BRIT1160132.jpg | 2026-03-25T15:17:57.493982+00:00 | 0.5454545 | e6563d1c69cd655f9cd02124e7a979b1d154ae6c | NULL | image/jpeg | TRUE | https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png | images | NA | urn:uuid:04531314-eeca-4d9d-a82d-68bd740ddfc6 , 70abba3e-5f2a-4276-87f3-261706e24453://web.corral.tacc.utexas.edu/brit/brit/brit1160000/brit1160132.jpg | 17bec873-859f-48ce-aed2-11c8f3b86093 | 70abba3e-5f2a-4276-87f3-261706e24453 | BY-NC-SA | NA | NA | 064eb2b0-aa47-487d-a2e4-cb0358df8125 | NA | http://creativecommons.org/licenses/by-nc-sa/4.0/ | NA | NA |
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