Package: ridigbio 0.4.1

Jesse Bennett

ridigbio: Interface to the iDigBio Data API

An interface to iDigBio's search API that allows downloading specimen records. Searches are returned as a data.frame. Other functions such as the metadata end points return lists of information. iDigBio is a US project focused on digitizing and serving museum specimen collections on the web. See <https://www.idigbio.org> for information on iDigBio.

Authors:Francois Michonneau [aut, cph], Matthew Collins [aut], Scott Chamberlain [ctb], Kevin Love [ctb], Hem Nalini Morzaria-Luna [ctb], Michelle L. Gaynor [ctb, aut], Jesse Bennett [cre]

ridigbio_0.4.1.tar.gz
ridigbio_0.4.1.zip(r-4.7)ridigbio_0.4.1.zip(r-4.6)ridigbio_0.4.1.zip(r-4.5)
ridigbio_0.4.1.tgz(r-4.6-any)ridigbio_0.4.1.tgz(r-4.5-any)
ridigbio_0.4.1.tar.gz(r-4.7-any)ridigbio_0.4.1.tar.gz(r-4.6-any)
ridigbio_0.4.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ridigbio/json (API)

# Install 'ridigbio' in R:
install.packages('ridigbio', repos = c('https://idigbio.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/idigbio/ridigbio/issues

Pkgdown/docs site:https://idigbio.github.io

On CRAN:

Conda:

9.78 score 17 stars 8 packages 101 scripts 4.0k downloads 1 mentions 11 exports 125 dependencies

Last updated from:4fbe5e59d9. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK165
source / vignettesOK307
linux-release-x86_64OK160
macos-release-arm64OK162
macos-oldrel-arm64OK136
windows-develOK96
windows-releaseOK88
windows-oldrelOK88
wasm-releaseOK197

Exports:idig_build_attribidig_count_mediaidig_count_recordsidig_meta_fieldsidig_searchidig_search_mediaidig_search_recordsidig_top_mediaidig_top_recordsidig_view_mediaidig_view_records

Dependencies:askpassbackportsbase64encbitbit64blobbroombslibcachemcallrcellrangerclassclassIntclicliprconflictedcowplotcpp11crayoncrosstalkcurldata.tableDBIdbplyrdigestdplyrdtplyre1071evaluatefarverfastmapfontawesomeforcatsfsgarglegenericsggplot2gluegoogledrivegooglesheets4gtablehavenhighrhmshtmltoolshtmlwidgetshttridsisobandjquerylibjsonlitekableExtraKernSmoothknitrlabelinglatticelazyevalleafletleaflet.providerslifecyclelubridatemagrittrMASSmemoisemimemodelropensslotelpillarpkgconfigplyrpngprettyunitsprocessxprogressproxypspurrrR6raggrappdirsrasterRColorBrewerRcppreadrreadxlrematchrematch2reprexrlangrmarkdownrstudioapirvests2S7sassscalesselectrsfspstringistringrsvglitesyssystemfontsterratextshapingtibbletidyrtidyselecttidyversetimechangetinytextzdbunitsutf8uuidvctrsviridisLitevroomwithrwkxfunxml2yaml

Tissue Samples Locator Demo
General Overview | Load Packages | Write a query to search for specimen records | Filter specimen records by preparation type | Select values to filter on and apply filter | Contact institutions with specimens of interest
Rendered fromFindTissue.Rmdusingknitr::rmarkdown

Last update: 2025-07-25
Started: 2024-07-16

Identification of Suspicious Coordinates
General Overview | Load Packages. | Write a query to search for specimen records | Visualize suspicious coordinates | Summarize and explore data
Rendered fromBadCoordinateID.Rmdusingknitr::rmarkdown

Last update: 2025-03-11
Started: 2024-07-16

Introduction to ridigbio
General Overview | Getting Started | Download Records | More ways to search | Download Media Records
Rendered fromBasicUsage.Rmdusingknitr::rmarkdown

Last update: 2024-09-27
Started: 2024-07-16

Fields in ridigbio
General Overview | Search API Fields | Retain records with these fields | Media Record API Fields
Rendered fromFields.Rmdusingknitr::rmarkdown

Last update: 2024-09-27
Started: 2024-07-16

Identification of Data Flags
General Overview | Load Packages | Write a query to search for specimen records
Rendered fromIDDataFlags.Rmdusingknitr::rmarkdown

Last update: 2024-09-27
Started: 2024-07-16

Identification of Modified Data
General Overview | Load Packages | Write a query to search for specimen records | Explore differences in the data | Summarize differences in the data
Rendered fromModifiedDataID.Rmdusingknitr::rmarkdown

Last update: 2024-09-27
Started: 2024-07-16

Media API Demo
General Overview | Load Packages | Write a query to search for specimen records | Generate a list of URLs | Download media
Rendered fromMediaAPIDemo.Rmdusingknitr::rmarkdown

Last update: 2024-09-27
Started: 2024-07-16

Record API Demo
General Overview | Load Packages | Write a query to search for specimens using idig_search_records | Quickly get a count of how many specimens match a query using idig_count_records | Discover the most frequent values for a field using idig_top_records
Rendered fromRecordAPIDemo.Rmdusingknitr::rmarkdown

Last update: 2024-09-27
Started: 2024-07-16

ridigbio
Rendered fromridigbio.Rmdusingknitr::rmarkdown

Last update: 2024-07-16
Started: 2024-07-16